\data

This repository contains the minimal indispensable data to reproduce the results in the associated publication.

FlyTracker generates additional output files, which have not been uploaded as they do not contribute to results replication.

All experiments have associated raw movies, which have not been uploaded due to file size constraints.

Both the additional FlyTracker output files and the raw movies are available upon request from the contact author (maria.vasconcelos@neuro.fchampalimaud.org).


\code

In order to properly run the code present in this repository, interested parties should make sure to modify the "EXPERIMENS_PATH" variable at cell #2 and the "savepath" variable at cell #4 of each python notebook to reflect the appropriate absolute paths.

Furthermore, interested parties should carefully consult both the "README.txt" and "requirements.txt", and ensure their python and package installations meet or exceed the required versions in order to be able to replicate our findings.

Finally, wherever an "aggression_rate_outlier_detection" notebook is found, that notebook should be the first one to be run, as it generates a file containing outlier IDs which is necessary for the remainder notebooks to function properly.
